[UBCG] Gene set

[UBCG] User’s manual
07/30/2017

[UBCG] Gene set

This document describes the gene set included the current version of UBCG phylogenomics pipeline [Learn more].

 

Gene COG category COG ID HMM profile Function
alaS J COG0013 TIGR00344 Alanine-tRNA ligase
argS J COG0018 TIGR00456 Arginine-tRNA ligase
aspS J COG0173 TIGR00459 Aspartate-tRNA ligase
cgtA DL COG0536 TIGR02729 GTPase ObgE/CgtA
coaE H COG0237 TIGR00152 Dephospho-CoA kinase
cysS J COG0215 TIGR00435 Cysteine-tRNA ligase
dnaA L COG0593 TIGR00362 Chromosomal replication initiator protein DnaA
dnaG L COG0358 TIGR01391 DNA primase
dnaX L COG2812 TIGR02397 DNA polymerase III subunit gamma
engA R COG1160 TIGR03594 GTPase Der
ffh U COG0541 TIGR00959 Signal recognition particle protein
fmt J COG0223 TIGR00460 Methionyl-tRNA formyltransferase
frr J COG0233 TIGR00496 Ribosome-recycling factor
ftsY U COG0552 TIGR00064 Signal recognition particle receptor FtsY
gmk F COG0194 TIGR03263 Guanylate kinase
hisS J COG0124 TIGR00442 Histidine-tRNA ligase
ileS J COG0060 TIGR00392 Isoleucine-tRNA ligase 1
infB J COG0532 TIGR00487 Translation initiation factor IF-2
infC J COG0290 TIGR00168 Translation initiation factor IF-3
ksgA J COG0030 TIGR00755 Ribosomal RNA small subunit methyltransferase A
lepA J COG0481 TIGR01393 Elongation factor 4
leuS J COG0495 TIGR00396 Leucine-tRNA ligase
ligA L COG0272 TIGR00575 DNA ligase
nusA K COG0195 TIGR01953 Transcription termination/antitermination protein NusA
nusG K COG0250 TIGR00922 Transcription termination/antitermination protein NusG
pgk G COG0126 PF00162 Phosphoglycerate kinase
pheS J COG0016 TIGR00468 Phenylalanine-tRNA ligase alpha subunit
pheT J COG0073 TIGR00472 Phenylalanine-tRNA ligase beta subunit
prfA J COG0216 TIGR00019 Peptide chain release factor 1
pyrG F COG0504 TIGR00337 CTP synthase
recA L COG0468 TIGR02012 DNA recombination and repair protein
rbfA J COG0858 TIGR00082 30S ribosome-binding factor
rnc K COG0571 TIGR02191 Ribonuclease 3
rplA J COG0081 TIGR01169 50S ribosomal protein L1
rplB J COG0090 TIGR01171 50S ribosomal protein L2
rplC J COG0087 TIGR03625 50S ribosomal protein L3
rplD J COG0088 TIGR03953 50S ribosomal protein L4
rplE J COG0094 PF00281 50S ribosomal protein L5
rplF J COG0097 TIGR03654 50S ribosomal protein L6
rplI J COG0359 TIGR00158 50S ribosomal protein L9
rplJ J COG0244 PF00466 50S ribosomal protein L10
rplK J COG0080 TIGR01632 50S ribosomal protein L11
rplL J COG0222 TIGR00855 50S ribosomal protein L7/L12
rplM J COG0102 TIGR01066 50S ribosomal protein L13
rplN J COG0093 TIGR01067 50S ribosomal protein L14
rplO J COG0200 TIGR01071 50S ribosomal protein L15
rplP J COG0197 TIGR01164 50S ribosomal protein L16
rplQ J COG0203 TIGR00059 50S ribosomal protein L17
rplR J COG0256 TIGR00060 50S ribosomal protein L18
rplS J COG0335 TIGR01024 50S ribosomal protein L19
rplT J COG0292 TIGR01032 50S ribosomal protein L20
rplU J COG0261 TIGR00061 50S ribosomal protein L21
rplV J COG0091 TIGR01044 50S ribosomal protein L22
rplW J COG0089 PF00276 50S ribosomal protein L23
rplX J COG0198 TIGR01079 50S ribosomal protein L24
rpmA J COG0211 TIGR00062 50S ribosomal protein L27
rpmC J COG0255 TIGR00012 50S ribosomal protein L29
rpmI J COG0291 TIGR00001 50S ribosomal protein L35
rpoA K COG0202 TIGR02027 DNA-directed RNA polymerase subunit alpha
rpoB K COG0085 TIGR02013 DNA-directed RNA polymerase subunit beta
rpoC K COG0086 TIGR02386 DNA-directed RNA polymerase subunit beta’
rpsB J COG0052 TIGR01011 30S ribosomal protein S2
rpsC J COG0092 TIGR01009 30S ribosomal protein S3
rpsD J COG0522 TIGR01017 30S ribosomal protein S4
rpsE J COG0098 TIGR01021 30S ribosomal protein S5
rpsF J COG0360 TIGR00166 30S ribosomal protein S6
rpsG J COG0049 TIGR01029 30S ribosomal protein S7
rpsH J COG0096 PF00410 30S ribosomal protein S8
rpsI J COG0103 PF00380 30S ribosomal protein S9
rpsJ J COG0051 TIGR01049 30S ribosomal protein S10
rpsK J COG0100 TIGR03632 30S ribosomal protein S11
rpsL J COG0048 TIGR00981 30S ribosomal protein S12
rpsM J COG0099 TIGR03631 30S ribosomal protein S13
rpsO J COG0184 TIGR00952 30S ribosomal protein S15
rpsP J COG0228 TIGR00002 30S ribosomal protein S16
rpsQ J COG0186 TIGR03635 30S ribosomal protein S17
rpsR J COG0238 TIGR00165 30S ribosomal protein S18
rpsS J COG0185 TIGR01050 30S ribosomal protein S19
rpsT J COG0268 TIGR00029 30S ribosomal protein S20
secA U COG0653 TIGR00963 Protein translocase subunit SecA
secG U COG1314 TIGR00810 Protein-export membrane protein SecG
secY U COG0201 TIGR00967 Protein translocase subunit SecY
serS J COG0172 TIGR00414 Serine-tRNA ligase
smpB O COG0691 TIGR00086 SsrA-binding protein
tig O COG0544 TIGR00115 Trigger factor
tilS J COG0037 TIGR02432 tRNA(Ile)-lysidine synthase
truB J COG0130 TIGR00431 tRNA pseudouridine synthase B
tsaD J COG0533 TIGR03723 tRNA N6-adenosine threonylcarbamoyltransferase
tsf J COG0264 TIGR00116 Elongation factor Ts
uvrB L COG0556 TIGR00631 UvrABC system protein B
ybeY J COG0319 TIGR00043 Endoribonuclease YbeY
ychF J COG0012 TIGR00092 Ribosome-binding ATPase YchF

 

Last updated Jan 28, 2018